9HS0
Copper-containing nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 80 |
| Detector technology | PIXEL |
| Collection date | 2017-01-23 |
| Detector | DECTRIS PILATUS 6M-F |
| Wavelength(s) | 0.928190 |
| Spacegroup name | P 21 3 |
| Unit cell lengths | 105.808, 105.808, 105.808 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 35.270 - 1.300 |
| R-factor | 0.09113 |
| Rwork | 0.090 |
| R-free | 0.10901 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.015 |
| RMSD bond angle | 2.012 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0430) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 35.290 | 1.250 |
| High resolution limit [Å] | 1.190 | 1.190 |
| Rmerge | 0.048 | 0.203 |
| Rmeas | 0.051 | 0.253 |
| Rpim | 0.016 | 0.148 |
| Total number of observations | 26296 | |
| Number of reflections | 121035 | 13033 |
| <I/σ(I)> | 20.2 | 2.2 |
| Completeness [%] | 95.0 | |
| Redundancy | 7.7 | 2 |
| CC(1/2) | 0.999 | 0.907 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION | 8 | 289 | 0.1 M TRIS pH 8.0, 30% w/v PEG 400, 8-15 mg/mL BjNirK |






