Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9HS0

Copper-containing nitrite reductase (NirK) from Bradyrhizobium japonicum USDA110

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]80
Detector technologyPIXEL
Collection date2017-01-23
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.928190
Spacegroup nameP 21 3
Unit cell lengths105.808, 105.808, 105.808
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.270 - 1.300
R-factor0.09113
Rwork0.090
R-free0.10901
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.015
RMSD bond angle2.012
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0430)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]35.2901.250
High resolution limit [Å]1.1901.190
Rmerge0.0480.203
Rmeas0.0510.253
Rpim0.0160.148
Total number of observations26296
Number of reflections12103513033
<I/σ(I)>20.22.2
Completeness [%]95.0
Redundancy7.72
CC(1/2)0.9990.907
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION82890.1 M TRIS pH 8.0, 30% w/v PEG 400, 8-15 mg/mL BjNirK

244349

PDB entries from 2025-11-05

PDB statisticsPDBj update infoContact PDBjnumon