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9HHJ

ManDH5 E303Q in complex with mannotetraose after co-crystalliztion with mannotetraose at 1.6 angstroms resolution a beta-D-Mannanase of GH5 family from Dictyoglomus thermophilium

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-30
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.976
Spacegroup nameI 2 2 2
Unit cell lengths94.942, 99.482, 153.448
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution51.170 - 1.830
R-factor0.174
Rwork0.173
R-free0.20210
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Native ManDH5
RMSD bond length0.007
RMSD bond angle0.879
Data reduction softwareXDS
Data scaling softwarexia2 (7.0.078)
Phasing softwarePHASER (1.17.1_3660)
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]83.5001.870
High resolution limit [Å]1.8301.830
Number of reflections6404253734
<I/σ(I)>16.61.8
Completeness [%]99.899.2
Redundancy13.413.8
CC(1/2)0.9980.715
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2940.1 M MMT buffer, pH 7.15, 27% PEG 1500, 0.01% Na-azide, 12.5mM Mannohexaose (drop ratio of 1:125 enzyme:substrate).

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