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9HFD

Crystal structure of human TRF1 TRFH domain in complex with compound 9

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2022-01-20
DetectorDECTRIS EIGER2 XE 9M
Wavelength(s)0.9179
Spacegroup nameP 31 2 1
Unit cell lengths85.367, 85.367, 91.640
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution42.680 - 2.150
R-factor0.23
Rwork0.229
R-free0.24460
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle0.820
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.4 (26-JUL-2023))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.8202.220
High resolution limit [Å]2.1502.150
Rmerge0.1022.490
Rmeas0.1072.633
Rpim0.0350.850
Total number of observations20913917254
Number of reflections214661815
<I/σ(I)>8.90.7
Completeness [%]100.0
Redundancy9.79.5
CC(1/2)0.9980.944
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6291150 nanoliter of TRF1 TRFH at 28.6 mg/mL plus 150 nanoliter of a crystallisation solution consisting of 0.1 M MES pH 6, 1-12 mM Mg(OAc)2, 1% PEG8000, and 10-15% glycerol, against 35 microliter of crystallisation solution.

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PDB entries from 2026-01-14

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