9H6B
Crystal structure of the E. coli F-plasmid VapBC toxin-antitoxin complex (VapB T3N, A13P, L16R)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-09-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979261 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 89.590, 89.590, 115.978 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.450 - 2.800 |
R-factor | 0.2346 |
Rwork | 0.230 |
R-free | 0.27480 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.907 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.21.1_5286: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.500 | 46.500 | 2.870 |
High resolution limit [Å] | 2.800 | 12.530 | 2.800 |
Rmerge | 0.093 | 0.036 | 2.806 |
Rmeas | 0.098 | 0.038 | 2.956 |
Number of reflections | 13688 | 188 | 993 |
<I/σ(I)> | 14.13 | ||
Completeness [%] | 99.9 | ||
Redundancy | 10.1 | ||
CC(1/2) | 0.999 | 0.998 | 0.333 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 0.2 M Lithium sulphate monohydrate, 0.1 M sodium citrate tribasic dihydrate, 26 % PEG200 |