9GXH
Nanobody bound to TBA G-quadruplex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-12-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.978565 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 36.284, 59.331, 70.625 |
Unit cell angles | 90.00, 95.79, 90.00 |
Refinement procedure
Resolution | 45.332 - 1.900 |
R-factor | 0.1581 |
Rwork | 0.154 |
R-free | 0.19850 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.973 |
Data reduction software | XDS |
Data scaling software | STARANISO (anisotropy correction) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 70.260 | 1.460 |
High resolution limit [Å] | 1.390 | 1.390 |
Rmerge | 0.138 | 3.649 |
Rmeas | 0.152 | 4.567 |
Rpim | 0.061 | 2.682 |
Total number of observations | 253447 | |
Number of reflections | 43889 | 1022 |
<I/σ(I)> | 6.8 | |
Completeness [%] | 72.7 | |
Redundancy | 5.8 | 2.4 |
CC(1/2) | 0.990 | 0.109 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 298 | 0.2 M Sodium chloride, 0.1 M Phosphate/citrate, pH = 4.2, 20 % w/v PEG 8000 cryosoak: same solution with 30% glycerol |