9GV6
Structure of TCR in complex with peptide-HLA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-14 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 74.120, 93.530, 388.950 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 90.940 - 2.770 |
R-factor | 0.21976 |
Rwork | 0.217 |
R-free | 0.27357 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.767 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 90.940 | 2.820 |
High resolution limit [Å] | 2.770 | 2.770 |
Rmerge | 0.212 | 3.438 |
Rmeas | 0.220 | 3.642 |
Rpim | 0.057 | 1.158 |
Number of reflections | 69770 | 3197 |
<I/σ(I)> | 8.1 | 0.3 |
Completeness [%] | 99.6 | 94.03 |
Redundancy | 14.4 | 9.2 |
CC(1/2) | 0.998 | 0.366 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M Sodium citrate tribasic dihydrate, 0.1 M Bis-Tris propane pH 7.5, and 20 % w/v PEG 3350 |