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9GPE

ManDH5 E303Q in complex with mannotetraose after co-crystalliztion with mannotetraose at 1.6 angstroms resolution a beta-D-Mannanase of GH5 family from Dictyoglomus thermophilium

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-30
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.976
Spacegroup nameI 2 2 2
Unit cell lengths94.946, 99.337, 153.553
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution83.400 - 1.620
R-factor0.165
Rwork0.164
R-free0.17880
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Native ManDH5
RMSD bond length0.006
RMSD bond angle0.903
Data reduction softwareXDS
Data scaling softwarexia2 (CCP4 7.8.078)
Phasing softwarePHASER
Refinement softwarePHENIX (1.14_3228)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]83.4001.650
High resolution limit [Å]1.6201.620
Number of reflections921514530
<I/σ(I)>19.13.3
Completeness [%]100.0100
Redundancy10.411
CC(1/2)0.9990.904
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72940.1 M MMT buffer pH 7.0, 27% PEG 1500, 0.01% Na-azide

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