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9GPD

ManDH5 E303Q mutant in complex with mannotriose a beta-D-Mannanase of GH5 family from Dictyoglomus thermophilium

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-30
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979
Spacegroup nameI 2 2 2
Unit cell lengths95.785, 99.114, 153.841
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution83.300 - 1.350
R-factor0.1564
Rwork0.156
R-free0.16740
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Native ManDH5
RMSD bond length0.009
RMSD bond angle1.125
Data reduction softwareXDS
Data scaling softwarexia2 (CCP4i2 7.0.078)
Phasing softwarePHASER (1.14_3228)
Refinement softwarePHENIX (1.14_3228)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]83.3001.370
High resolution limit [Å]1.3501.350
Number of reflections1591427778
<I/σ(I)>22.13.4
Completeness [%]99.799
Redundancy13.313.6
CC(1/2)1.0000.894
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2940.1M MMT buffer pH 7.0, 27% PEG 1500, 0.01% Na-azide Protein solution (in tris) was mixed with mannotetraose solution (in tris), final conentrations: 0.22mM protein, 15mM M3

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PDB entries from 2026-01-14

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