Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9GPC

The crystal structure of ManDH5 E303Q mutant at 1.4 Angstroms Resolution - a beta-D-Mannanase of GH5 family from Dictyoglomus thermophilium

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-30
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979
Spacegroup nameI 2 2 2
Unit cell lengths95.499, 99.128, 154.563
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution83.440 - 1.400
R-factor0.1482
Rwork0.147
R-free0.16880
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)ManDH5 Native structure
RMSD bond length0.010
RMSD bond angle1.148
Data reduction softwareXDS
Data scaling softwarexia2 (CCP4i2 7.0.078)
Phasing softwarePHASER (1.17.1_3660)
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]83.4401.420
High resolution limit [Å]1.4001.400
Number of reflections1435347037
<I/σ(I)>142.2
Completeness [%]100.0
Redundancy6.5
CC(1/2)0.9990.731
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72940.1 M MMT buffer pH 7.0, 28% PEG 1500

247536

PDB entries from 2026-01-14

PDB statisticsPDBj update infoContact PDBjnumon