Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9GNM

X-ray crystal structure of VvPYL1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2023-11-24
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97912
Spacegroup nameP 21 21 21
Unit cell lengths54.028, 69.417, 107.698
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.640 - 2.100
R-factor0.234
Rwork0.232
R-free0.26950
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS
Data scaling softwareXDS
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.6402.180
High resolution limit [Å]2.1002.100
Number of reflections242462375
<I/σ(I)>47.341.33
Completeness [%]99.698.8
Redundancy1.34
CC(1/2)0.9460.825
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP52910.1 M sodium acetate, pH 5.0, 0.2 M magnesium chloride, 20% PEG 6000

240971

PDB entries from 2025-08-27

PDB statisticsPDBj update infoContact PDBjnumon