9GK1
SSX structure of human cytochrome P450 3A4 at room temperature
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2022-12-09 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 79.950, 103.740, 128.640 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 80.750 - 2.950 |
R-factor | 0.24643 |
Rwork | 0.244 |
R-free | 0.29508 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 1.208 |
Data reduction software | CrystFEL (0.10.1-6) |
Data scaling software | CrystFEL (0.10.1-6) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 80.750 | 3.000 |
High resolution limit [Å] | 2.950 | 2.950 |
Number of reflections | 11603 | 547 |
<I/σ(I)> | 14.758752 | 1 |
Completeness [%] | 100.0 | 100 |
Redundancy | 416.91 | 282.9 |
CC(1/2) | 0.995 | 0.545 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.3 | 293.15 | Final droplet contained 6%v/v PEG3350, 50 mM sodium malonate, 15 mg/mL CYP3A4, 25 mM KPi pH 7.3, 100 mM KCl, 1 mM DTT, 0.5 mM EDTA, 10%v/v glycerol, 1%v/v DMSO and 100 uM beta-napthoflavone. The droplet was equillibrated against a reservoir of 100 mM sodium malonate and 12%v/v PEG3350. The crystalisation droplet swelled due to high glycerol concentration. |