9FYM
Lacto-N-biosidase from Treponema denticola ATCC 35405
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-02-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.03320 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 43.954, 50.701, 153.656 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.150 - 1.340 |
R-factor | 0.1702 |
Rwork | 0.169 |
R-free | 0.19670 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.014 |
RMSD bond angle | 1.270 |
Data reduction software | autoPROC |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.150 | 1.390 |
High resolution limit [Å] | 1.340 | 1.340 |
Rmerge | 0.083 | 1.000 |
Rmeas | 0.089 | 1.000 |
Rpim | 0.031 | 1.000 |
Number of reflections | 77556 | 7469 |
<I/σ(I)> | 11.31 | 0.83 |
Completeness [%] | 99.6 | 97.97 |
Redundancy | 8.2 | 7.1 |
CC(1/2) | 0.998 | 0.464 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 294.15 | 10% w/v PEG 8000, 9% ethylene glycol, 0.1M HEPES pH 7.5 |