9FWR
Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00249
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.347, 70.649, 109.361 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.340 - 2.294 |
R-factor | 0.2123 |
Rwork | 0.210 |
R-free | 0.25100 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.007 |
RMSD bond angle | 0.900 |
Data reduction software | XDS (Jan 10, 2022) |
Data scaling software | Aimless (0.7.7) |
Refinement software | BUSTER (2.10.4) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.343 | 59.343 | 2.334 |
High resolution limit [Å] | 2.294 | 6.225 | 2.294 |
Rmerge | 0.088 | 0.051 | 1.218 |
Rmeas | 0.091 | 0.054 | 1.266 |
Rpim | 0.025 | 0.016 | 0.342 |
Total number of observations | 297081 | 14602 | 14676 |
Number of reflections | 22278 | 1222 | 1091 |
<I/σ(I)> | 17.13 | 40.61 | 2.35 |
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 13.34 | 11.95 | 13.45 |
CC(1/2) | 0.997 | 0.996 | 0.796 |
Anomalous redundancy | 7.1 | 7.1 | 7.0 |
CC(ano) | -0.048 | 0.002 | -0.001 |
|DANO|/σ(DANO) | 0.8 | 1.3 | 0.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Morpheus buffer 2 (pH: 7.5): 0.10M - Morpheus Ethylene glycols: 23.00%w/v Morpheus Amino acids: 0.09M |