Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9FOD

Glyceraldehyde 3-phosphate dehydrogenase A (GAPDHA) apoenzyme, from Helicobacter pylori

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2023-02-02
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.9537
Spacegroup nameI 2 2 2
Unit cell lengths87.938, 94.811, 95.726
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution67.360 - 1.444
Rwork0.140
R-free0.17670
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.013
RMSD bond angle1.769
Data reduction softwareautoPROC
Data scaling softwareSTARANISO
Phasing softwareMoRDa
Refinement softwareREFMAC (5.8.0405)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]67.3601.570
High resolution limit [Å]1.4401.440
Rmeas0.0881.838
Number of reflections555392777
<I/σ(I)>16.6
Completeness [%]95.469.3
Redundancy13.713.7
CC(1/2)0.9990.741
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52910.2M NH4SO4, 0.1M Bis-Tris pH 6.5, 25% w/v PEG3350 300nl drop, mixed either 1:1 or 2:1

248942

PDB entries from 2026-02-11

PDB statisticsPDBj update infoContact PDBjnumon