9FMB
Crystal structure of human IgD-Fc
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-05-08 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.6888 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 105.825, 43.667, 121.470 |
Unit cell angles | 90.00, 107.96, 90.00 |
Refinement procedure
Resolution | 52.450 - 3.000 |
R-factor | 0.2313 |
Rwork | 0.228 |
R-free | 0.28820 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.670 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.450 | 3.180 |
High resolution limit [Å] | 3.000 | 3.000 |
Rpim | 0.142 | 0.504 |
Number of reflections | 21769 | 3452 |
<I/σ(I)> | 5.9 | 2 |
Completeness [%] | 99.9 | 99.3 |
Redundancy | 15.5 | 15.8 |
CC(1/2) | 0.962 | 0.349 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 0.1M Bis-Tris pH5.5, 25% PEG 3350, 0.2M ammonium acetate |