9FK3
The structure of glycosynthase XT6 (E265G mutant), the extracellular xylanase of G.proteiniphilus T-6 in complex with xylobiose-F and xylotetraose-F molecules
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-28 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 89.592, 61.901, 110.647 |
Unit cell angles | 90.00, 105.25, 90.00 |
Refinement procedure
Resolution | 34.100 - 2.200 |
R-factor | 0.1567 |
Rwork | 0.154 |
R-free | 0.19960 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.848 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.100 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.110 | 0.450 |
Rmeas | 0.120 | 0.560 |
Rpim | 0.060 | 0.310 |
Number of reflections | 29862 | 2589 |
<I/σ(I)> | 9.3 | 2.4 |
Completeness [%] | 99.9 | |
Redundancy | 4 | |
CC(1/2) | 0.990 | 0.790 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 0.01M Zinc chloride, 17% PEG 5000, and 0.1M MES buffer at pH 6.5. |