9FDL
Crystal structure of the catalytic domain of an AA9 lytic polysaccharide monooxygenase from Thermothelomyces thermophilus (TtLPMO9F)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-12-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 55.891, 112.293, 262.381 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 131.536 - 2.330 |
Rwork | 0.162 |
R-free | 0.20410 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.857 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 262.380 | 2.410 |
High resolution limit [Å] | 2.330 | 2.330 |
Rmerge | 0.324 | 2.476 |
Rmeas | 0.350 | 2.569 |
Rpim | 0.132 | 0.681 |
Number of reflections | 35897 | 48717 |
<I/σ(I)> | 6.5 | |
Completeness [%] | 100.0 | |
Redundancy | 13.4 | 14.1 |
CC(1/2) | 0.993 | 0.534 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 10% w/v PEG 20 000, 20% v/v PEG MME 550, 0.02 M of sodium formate, 0.02 M ammonium acetate, 0.02 M trisodium citrate, 0.02 M sodium potassium L-tartrate, 0.02 M sodium oxamate, 0.1 M MES/imidazole pH 6.5 |