Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9F5J

SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant Q58I

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2024-02-29
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.8929
Spacegroup nameP 21 21 21
Unit cell lengths47.780, 49.715, 114.248
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution57.124 - 2.200
Rwork0.202
R-free0.24230
Structure solution methodSAD
RMSD bond length0.013
RMSD bond angle1.909
Data reduction softwareautoPROC (1.1.7)
Data scaling softwareAimless (0.7.13)
Phasing softwareCRANK2 (2.0.339)
Refinement softwareREFMAC (5.8.0430 (refmacat 0.4.88))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]114.250114.2502.270
High resolution limit [Å]2.2009.0702.200
Rmerge0.1040.0600.611
Rmeas0.1060.0610.629
Rpim0.0220.0120.148
Number of reflections144762631257
<I/σ(I)>2548.96.4
Completeness [%]100.0
Redundancy43.234.233.7
CC(1/2)0.9990.9990.987
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8277200mM Ammonium sulfate 10mM Cadmium chloride 25% PEG Smear Medium 100mM HEPES pH 7.5 30mM Manganese chloride

230744

PDB entries from 2025-01-29

PDB statisticsPDBj update infoContact PDBjnumon