9F5J
SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant Q58I
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2024-02-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.8929 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.780, 49.715, 114.248 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.124 - 2.200 |
Rwork | 0.202 |
R-free | 0.24230 |
Structure solution method | SAD |
RMSD bond length | 0.013 |
RMSD bond angle | 1.909 |
Data reduction software | autoPROC (1.1.7) |
Data scaling software | Aimless (0.7.13) |
Phasing software | CRANK2 (2.0.339) |
Refinement software | REFMAC (5.8.0430 (refmacat 0.4.88)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 114.250 | 114.250 | 2.270 |
High resolution limit [Å] | 2.200 | 9.070 | 2.200 |
Rmerge | 0.104 | 0.060 | 0.611 |
Rmeas | 0.106 | 0.061 | 0.629 |
Rpim | 0.022 | 0.012 | 0.148 |
Number of reflections | 14476 | 263 | 1257 |
<I/σ(I)> | 25 | 48.9 | 6.4 |
Completeness [%] | 100.0 | ||
Redundancy | 43.2 | 34.2 | 33.7 |
CC(1/2) | 0.999 | 0.999 | 0.987 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 277 | 200mM Ammonium sulfate 10mM Cadmium chloride 25% PEG Smear Medium 100mM HEPES pH 7.5 30mM Manganese chloride |