9F46
crystal structure of apo-[FeFe]-hydrogenase CbA5H from Clostridium beijerinckii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-05-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97242 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 167.900, 167.900, 125.380 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.890 - 2.450 |
R-factor | 0.2417 |
Rwork | 0.239 |
R-free | 0.28910 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.738 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.890 | 48.890 | 2.510 |
High resolution limit [Å] | 2.450 | 10.960 | 2.450 |
Rmerge | 0.164 | 0.060 | 2.030 |
Rmeas | 0.167 | 0.061 | 2.069 |
Number of reflections | 66161 | 854 | 4823 |
<I/σ(I)> | 12.72 | ||
Completeness [%] | 100.0 | ||
Redundancy | 26.5 | ||
CC(1/2) | 0.999 | 0.999 | 0.655 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 277 | 0.1M HEPES (pH 7.5), 0.4M MgCl2, 26% PEG400 |