9F3N
Crystal structure of the intermediate open state of apo Kluyveromyces lactis glucokinase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 63 |
Unit cell lengths | 177.664, 177.664, 90.026 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 76.930 - 2.650 |
R-factor | 0.2169 |
Rwork | 0.216 |
R-free | 0.23400 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.509 |
Data reduction software | DIALS (1.dev.877-g8f078f0) |
Data scaling software | Aimless (0.5.31) |
Phasing software | MR-Rosetta (ROSETTA 3.5) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 153.860 | 2.740 |
High resolution limit [Å] | 2.560 | 2.650 |
Number of reflections | 47188 | 4587 |
<I/σ(I)> | 9.2 | 0.7 |
Completeness [%] | 100.0 | 100 |
Redundancy | 9.7 | 9.8 |
CC(1/2) | 0.996 | 0.302 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | droplet: 1:1 mixture of protein and reservoir protein supplemented with: 9.9 mM DTT reservoir solution: 100 mM Na citrate pH 6.0 1.8 M Na malonate pH 5.7 |