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9EXB

SARS-CoV-2 Nucleocapsid N-terminal domain NTD

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2022-04-06
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9762
Spacegroup nameP 21 21 21
Unit cell lengths58.916, 93.073, 96.936
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution67.140 - 2.300
R-factor0.271
Rwork0.269
R-free0.32000
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle0.900
Data reduction softwareautoPROC (1.1.17)
Data scaling softwareAimless (0.7.13)
Phasing softwarePHASER (2.8.3)
Refinement softwareBUSTER (2.10.4)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]96.98096.9802.380
High resolution limit [Å]2.3008.9102.300
Rmerge0.2030.0634.069
Rmeas0.2120.0664.252
Rpim0.0620.0201.224
Number of reflections243625012359
<I/σ(I)>11.839.20.9
Completeness [%]99.799.9100
Redundancy2118.322
CC(1/2)0.9980.9980.599
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP829320% PEG 6000 100mM MES pH 6.0 10mM Zinc Chloride

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PDB entries from 2025-07-02

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