9EXB
SARS-CoV-2 Nucleocapsid N-terminal domain NTD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 58.916, 93.073, 96.936 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 67.140 - 2.300 |
R-factor | 0.271 |
Rwork | 0.269 |
R-free | 0.32000 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.900 |
Data reduction software | autoPROC (1.1.17) |
Data scaling software | Aimless (0.7.13) |
Phasing software | PHASER (2.8.3) |
Refinement software | BUSTER (2.10.4) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 96.980 | 96.980 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.203 | 0.063 | 4.069 |
Rmeas | 0.212 | 0.066 | 4.252 |
Rpim | 0.062 | 0.020 | 1.224 |
Number of reflections | 24362 | 501 | 2359 |
<I/σ(I)> | 11.8 | 39.2 | 0.9 |
Completeness [%] | 99.7 | 99.9 | 100 |
Redundancy | 21 | 18.3 | 22 |
CC(1/2) | 0.998 | 0.998 | 0.599 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 20% PEG 6000 100mM MES pH 6.0 10mM Zinc Chloride |