9EWH
SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant Y109A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2024-02-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.96862 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.836, 55.139, 84.088 |
Unit cell angles | 90.00, 95.24, 90.00 |
Refinement procedure
Resolution | 83.740 - 1.930 |
R-factor | 0.2137 |
Rwork | 0.212 |
R-free | 0.25510 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.000 |
Data reduction software | autoPROC (1.1.7) |
Data scaling software | Aimless (0.7.13) |
Phasing software | PHASER (2.8.3) |
Refinement software | BUSTER (2.10.4) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 83.740 | 83.740 | 1.970 |
High resolution limit [Å] | 1.920 | 9.030 | 1.920 |
Rmerge | 0.100 | 0.035 | 0.605 |
Rmeas | 0.114 | 0.040 | 0.687 |
Rpim | 0.054 | 0.019 | 0.320 |
Number of reflections | 40470 | 433 | 2755 |
<I/σ(I)> | 12.5 | 33.4 | 3.1 |
Completeness [%] | 98.9 | 99.1 | 99.2 |
Redundancy | 8.2 | 7.5 | 8.4 |
CC(1/2) | 0.998 | 0.999 | 0.889 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 277 | PEG 3350 |