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9EMI

KOD-H4 DNA polymerase mutant in a ternary complex containing six HNA nucleotides and a non-hydrolyzable triphosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE X13
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineX13
Temperature [K]100
Detector technologyPIXEL
Collection date2023-07-13
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.976250
Spacegroup nameP 21 21 2
Unit cell lengths111.454, 151.548, 70.406
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution41.040 - 2.270
R-factor0.2357
Rwork0.234
R-free0.26540
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.641
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((dev_4788: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.8092.400
High resolution limit [Å]2.2602.260
Number of reflections10109217452
<I/σ(I)>7.44
Completeness [%]93.7
Redundancy7
CC(1/2)0.9960.237
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29110% w/v PEG 8000, 20% v/v ethylene glycol 0.02 M D-glucose, 0.02 M D-mannose, 0.02 M D-galactose, 0.02 M L-fucose, 0.02 M D-xylose, 0.02 M N-acetyl-D-glucosamine , 0.1 M bicine/Trizma base pH 8.5

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PDB entries from 2025-12-10

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