9EJ2
Rat cytosolic PEPCK in complex with GTP and oxalate (313K)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE 7B2 |
Synchrotron site | CHESS |
Beamline | 7B2 |
Temperature [K] | 313 |
Detector technology | PIXEL |
Collection date | 2023-01-01 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.1271 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.296, 120.160, 61.118 |
Unit cell angles | 90.00, 111.47, 90.00 |
Refinement procedure
Resolution | 56.880 - 2.120 |
R-factor | 0.1912 |
Rwork | 0.189 |
R-free | 0.23180 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.505 |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.21.2_5419: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 119.820 | 2.150 |
High resolution limit [Å] | 2.110 | 2.110 |
Rmerge | 0.111 | 1.436 |
Rmeas | 0.121 | 1.564 |
Rpim | 0.047 | 0.615 |
Number of reflections | 34331 | 1714 |
<I/σ(I)> | 6.2 | 0.2 |
Completeness [%] | 99.6 | 98.85 |
Redundancy | 6.57 | 6.33 |
CC(1/2) | 0.996 | 0.614 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 313 | 0.1 M HEPES pH 7.5, 0.5 uL of 100 mM MnCl2, 10 mM GTP, and 18-28% PEG 3350 |