9EEY
STEP (PTPN5) with active-site disulfide bond and allosteric-site loop shift
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-08-05 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.920105 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.673, 63.621, 135.800 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.610 - 1.750 |
R-factor | 0.2008 |
Rwork | 0.199 |
R-free | 0.23770 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.014 |
RMSD bond angle | 0.999 |
Data reduction software | xia2 (3.7.1) |
Data scaling software | DIALS (3.7.1-gfb34cbf01-release) |
Phasing software | PHASER (2.8.2 (svn 8393)) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.620 | 1.780 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmerge | 0.157 | 4.668 |
Rmeas | 0.164 | 4.890 |
Rpim | 0.045 | 1.443 |
Number of reflections | 35607 | 1726 |
<I/σ(I)> | 7.2 | 0.3 |
Completeness [%] | 99.8 | 98.7 |
Redundancy | 12.9 | 11.2 |
CC(1/2) | 0.997 | 0.320 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 298.15 | 30% PEG 3350, 0.2 M lithium sulfate, 0.1 M bis-tris pH 5.5 |