9EDP
GVIII-Chiba040502 norovirus protruding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-12-02 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.95372 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 107.241, 107.241, 61.577 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.440 - 1.760 |
R-factor | 0.1415 |
Rwork | 0.140 |
R-free | 0.18070 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.821 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.8) |
Phasing software | PHASER (9.0.002) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.440 | 1.790 |
High resolution limit [Å] | 1.760 | 1.760 |
Rmerge | 0.104 | 0.992 |
Rmeas | 0.108 | 1.030 |
Rpim | 0.029 | 0.273 |
Total number of observations | 563727 | 31242 |
Number of reflections | 40834 | 2291 |
<I/σ(I)> | 15.4 | 2.2 |
Completeness [%] | 99.9 | |
Redundancy | 13.8 | 13.6 |
CC(1/2) | 0.999 | 0.843 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291.15 | 0.1 M Bis-Tris (pH 5.5), 25% w/v PEG 3350 |