9EDM
GII.9-VA97207 norovirus protruding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2024-10-15 |
Detector | DECTRIS EIGER2 S 9M |
Wavelength(s) | 0.95372 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 94.190, 96.890, 65.790 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.130 - 1.980 |
R-factor | 0.1668 |
Rwork | 0.165 |
R-free | 0.20950 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.830 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.8) |
Phasing software | PHASER (9.0.002) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.440 | 2.020 |
High resolution limit [Å] | 1.980 | 1.980 |
Rmerge | 0.229 | 1.791 |
Rmeas | 0.241 | 1.877 |
Rpim | 0.071 | 0.554 |
Total number of observations | 30735 | |
Number of reflections | 42579 | 2810 |
<I/σ(I)> | 8.5 | 1.1 |
Completeness [%] | 99.3 | |
Redundancy | 11.2 | 10.9 |
CC(1/2) | 0.996 | 0.540 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291.15 | 0.1 M HEPES (pH 7.0), 30% v/v Jeffamine ED-2003 |