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9EBF

FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, borolane-based compound Q41 bound in crystal form 6

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron siteAustralian Synchrotron
BeamlineMX2
Temperature [K]100
Detector technologyPIXEL
Collection date2023-04-27
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.954
Spacegroup nameI 2 3
Unit cell lengths212.286, 212.286, 212.286
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.470 - 2.500
R-factor0.185
Rwork0.183
R-free0.22210
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.008
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.4702.570
High resolution limit [Å]2.5002.500
Rmerge0.1222.179
Rmeas0.1242.215
Rpim0.0220.394
Total number of observations1710359135026
Number of reflections548464421
<I/σ(I)>23.72.1
Completeness [%]99.9
Redundancy31.230.5
CC(1/2)1.0000.692
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.5291.1516 uL 11.2 mg/mL FphE (10 mM HEPES pH 7.5, 100 mM NaCl) were mixed with 6 uL Q41 (50 mM in DMSO) and incubated at 18C overnight. 0.15 uL FphE-Q41 solution was mixed with 0.3 uL of reservoir solution. Sitting drop reservoir contained 25 uL of 180 mM Potassium Thiocyanate, 100 mM Sodium acetate pH 5.5, 22.5% PEG 2000 MME. Crystal was frozen in a solution of ~25% glycerol, 75% reservoir.

248942

PDB entries from 2026-02-11

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