9E9Q
SARS-CoV-2 SL5 crystal structure native
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-07 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.59980 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 96.717, 96.717, 114.823 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.360 - 3.330 |
R-factor | 0.1626 |
Rwork | 0.158 |
R-free | 0.20430 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.357 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | AutoSol |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.360 | 3.449 |
High resolution limit [Å] | 3.330 | 3.330 |
Rmerge | 0.069 | 3.428 |
Number of reflections | 17556 | 1721 |
<I/σ(I)> | 15.35 | 0.67 |
Completeness [%] | 99.8 | |
Redundancy | 10.4 | |
CC(1/2) | 0.997 | 0.246 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 1.2-1.4 M sodium citrate, 0.1 M HEPES-NaOH, pH 6.5-7.5 reservoir mixed in ratios of 1:2, 1:1, or 2:1 with folded RNA solution containing 25 mM HEPES-KOH, pH 7.4, 150 mM KCl, 10 mM MgCl2 |