9DXI
Crystal structure of dimer Caenorhabditis elegans lipid binding protein 3 (LBP-3)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.731, 68.846, 103.891 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.090 - 2.170 |
R-factor | 0.2219 |
Rwork | 0.219 |
R-free | 0.26820 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.574 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.21.2_5419: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.260 |
High resolution limit [Å] | 2.170 | 4.700 | 2.170 |
Rmerge | 0.201 | 0.102 | 1.310 |
Rmeas | 0.212 | 0.109 | 1.417 |
Rpim | 0.065 | 0.038 | 0.528 |
Number of reflections | 17848 | 1929 | 1705 |
<I/σ(I)> | 5.4 | ||
Completeness [%] | 99.7 | 99.1 | 98.9 |
Redundancy | 10.1 | 8.7 | 6.7 |
CC(1/2) | 0.998 | 0.996 | 0.634 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 277 | 14% PEG 3350, 0.16 M NaCl, 0.1 M Sodium Citrate |