Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9DUJ

Crystal structure of RufO in complex with (Nle)RYLH

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 19-ID
Synchrotron siteNSLS-II
Beamline19-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2024-09-27
DetectorDECTRIS EIGER2 XE 9M
Wavelength(s)0.97857
Spacegroup nameP 21 21 21
Unit cell lengths56.258, 77.833, 89.178
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.580 - 1.510
R-factor0.1646
Rwork0.164
R-free0.19080
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.870
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHENIX
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.540
High resolution limit [Å]1.5104.1001.510
Rmerge0.1180.0590.631
Rmeas0.1240.0620.662
Rpim0.0350.0170.199
Total number of observations760297
Number of reflections6206533403051
<I/σ(I)>9.5
Completeness [%]100.099.8100
Redundancy12.312.110.5
CC(1/2)0.9950.9980.925
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP27920% (w/v) PEG 3000, 100 mM Tris base/HCl pH 7.0, 200 mM Calcium acetate

251174

PDB entries from 2026-03-25

PDB statisticsPDBj update infoContact PDBjnumon