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9DK4

ancestral hydroxynitrile lyase with fifteen substitutions

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X17B1
Synchrotron siteNSLS
BeamlineX17B1
Temperature [K]100
Detector technologyPIXEL
Collection date2024-03-03
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.979
Spacegroup nameP 1 21 1
Unit cell lengths67.244, 80.385, 92.823
Unit cell angles90.00, 90.62, 90.00
Refinement procedure
Resolution46.410 - 1.880
R-factor0.1875
Rwork0.186
R-free0.22730
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle0.876
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.4101.930
High resolution limit [Å]1.8801.880
Rmerge0.1370.408
Rmeas0.1630.493
Rpim0.0870.305
Number of reflections734453672
<I/σ(I)>4.6
Completeness [%]91.4
Redundancy3.2
CC(1/2)0.9670.715
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP295J000843, C8 5%(w/v) PEG 20K, 25%(w/v) 1,1,1-tris(hydroxymethyl)propane, 1%(w/v) NDSB 195 (dimethylethylammonium propane sulfonate), 1 mM of each alkali (barium acetate, cesium acetate, rubidium chloride, strontium acetate) and 0.1 M N,N-bis(2-hydroxyethyl)-2-aminoethanesulfonic acid/triethylamine pH 7.5

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PDB entries from 2024-11-06

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