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9DGK

The Retinoblastoma Protein with Mutation M704V

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.1
Synchrotron siteALS
Beamline5.0.1
Temperature [K]100
Detector technologyPIXEL
Collection date2024-05-25
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0
Spacegroup nameH 3
Unit cell lengths250.837, 250.837, 35.394
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution47.400 - 2.380
R-factor0.2239
Rwork0.220
R-free0.27740
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.015
RMSD bond angle1.507
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.4002.470
High resolution limit [Å]2.3802.380
Number of reflections332573459
<I/σ(I)>10.2
Completeness [%]100.0
Redundancy10.5
CC(1/2)0.9970.381
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP277.1518% PEG 8K, 0.1M sodium citrate, 0.1M succinate pH 5.5, 1M lithium chloride

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PDB entries from 2025-08-06

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