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9DFA

Thermococcus gammatolerans DNA Ligase

Replaces:  6WBO
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]291
Detector technologyPIXEL
Collection date2022-07-02
DetectorDECTRIS PILATUS3 X 6M
Wavelength(s)0.9792
Spacegroup nameP 21 21 21
Unit cell lengths92.650, 93.700, 97.050
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.070 - 2.170
R-factor0.2174
Rwork0.215
R-free0.25800
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.077
Data reduction softwareXDS (Jan 10, 2022)
Data scaling softwareXSCALE (Jan 10, 2022)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1-4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.00010.0002.270
High resolution limit [Å]2.17010.0002.170
Rmerge0.1070.0502.646
Rmeas0.1130.0542.806
Rpim0.0380.992
Number of reflections454185415676
<I/σ(I)>11.4
Completeness [%]99.997.1100
Redundancy8.977.48249.111698
CC(1/2)0.9980.9980.752
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH7291HEPES 0.08M pH7, 2-propanol 8.5%, PEG 4000 5%, [7.7mg/ml protein]

250835

PDB entries from 2026-03-18

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