9DBC
Mn-Bound Structure of Computationally Designed Homotrimer Tet4
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-11-17 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.127030 |
Spacegroup name | H 3 |
Unit cell lengths | 71.920, 71.920, 55.490 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 41.430 - 2.300 |
R-factor | 0.212 |
Rwork | 0.206 |
R-free | 0.26180 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.481 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17_3644) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.430 | 2.383 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.051 | 1.152 |
Rmeas | 0.053 | 1.222 |
Rpim | 0.017 | 0.401 |
Number of reflections | 9531 | 1493 |
<I/σ(I)> | 22.27 | 1.84 |
Completeness [%] | 99.9 | 99.16 |
Redundancy | 10.2 | 8.9 |
CC(1/2) | 1.000 | 0.760 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 298 | 20% PEG 400, 200 mM (NH4)2SO4, 100 mM Bis-Tris (pH 5.5) |