9DAP
Human norovirus GII.3 protease in complex with rupintrivir
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 298 |
Detector technology | PIXEL |
Collection date | 2023-03-10 |
Detector | DECTRIS PILATUS3 S 2M |
Wavelength(s) | 1 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 97.329, 97.329, 43.770 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.660 - 2.710 |
R-factor | 0.1889 |
Rwork | 0.186 |
R-free | 0.24030 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.006 |
Data reduction software | iMOSFLM |
Data scaling software | pointless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.21rc1_5156) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.660 | 3.410 |
High resolution limit [Å] | 2.710 | 2.710 |
Rmerge | 0.048 | |
Rmeas | 0.067 | |
Rpim | 0.048 | |
Number of reflections | 6699 | 6292 |
<I/σ(I)> | 9.86 | 3.85 |
Completeness [%] | 99.8 | 99.67 |
Redundancy | 1.1 | 1 |
CC(1/2) | 0.997 | 0.963 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 298 | 0.3 M Sodium Formate, 0.1 M Sodium Citrate Tribasic:HCl, 22.5 % (v/v) PurePEGs Cocktail |