9CD2
Structure of E. coli ZDHYS365 multi-ubiquitin domain protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-08-31 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.97741 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 117.538, 117.538, 104.444 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.460 - 1.870 |
R-factor | 0.1832 |
Rwork | 0.182 |
R-free | 0.21270 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.017 |
RMSD bond angle | 1.398 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.21.1_5286) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.460 | 1.910 |
High resolution limit [Å] | 1.870 | 1.870 |
Rmerge | 0.093 | 2.232 |
Rpim | 0.032 | 0.978 |
Number of reflections | 69110 | 4378 |
<I/σ(I)> | 16.1 | 0.8 |
Completeness [%] | 100.0 | 100 |
Redundancy | 9.5 | 6.1 |
CC(1/2) | 0.999 | 0.359 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 293 | 1 M LiCl, 0.1 M sodium acetate, and 30% PEG 6000 |