9C8M
High-resolution structure of cytochrome c peroxidase from yeast under cryogenic conditions and ambient pressure
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE 7B2 |
Synchrotron site | CHESS |
Beamline | 7B2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-11-03 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 0.96860 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 44.605, 72.888, 100.378 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.340 - 1.780 |
R-factor | 0.1751 |
Rwork | 0.173 |
R-free | 0.21310 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.862 |
Data scaling software | HKL-2000 (v722) |
Phasing software | PHENIX (1.21_5207) |
Refinement software | PHENIX (1.21_5207) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.340 | 1.810 |
High resolution limit [Å] | 1.780 | 1.780 |
Rmerge | 0.106 | 0.909 |
Rmeas | 0.109 | 0.936 |
Rpim | 0.022 | 0.218 |
Number of reflections | 31873 | 1516 |
<I/σ(I)> | 58.18 | 3.65 |
Completeness [%] | 99.5 | 97.74 |
Redundancy | 26.4 | |
CC(1/2) | 1.000 | 0.910 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 10-25 % polyethylene glycol 550 (MME) and 100 mM 2-(N-morpholino)ethanesulfonic acid (pH 6.1-7.1) |