9C8C
Structure of proline utilization A with the FAD covalently-modified by propanal resulting from inactivation with N-allylglycine
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-01-18 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 101.245, 102.309, 127.005 |
Unit cell angles | 90.00, 106.53, 90.00 |
Refinement procedure
Resolution | 89.280 - 1.540 |
R-factor | 0.1873 |
Rwork | 0.186 |
R-free | 0.20460 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.006 |
RMSD bond angle | 0.841 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.21rc1_5156) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 89.280 | 1.570 |
High resolution limit [Å] | 1.540 | 1.540 |
Rmerge | 0.058 | 1.059 |
Rmeas | 0.065 | 1.204 |
Rpim | 0.030 | 0.561 |
Total number of observations | 75851 | |
Number of reflections | 694589 | 17834 |
<I/σ(I)> | 14.4 | 1.3 |
Completeness [%] | 98.8 | |
Redundancy | 4.4 | 4.3 |
CC(1/2) | 0.999 | 0.531 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 286 | Reservoir solution contained 14-18% PEG 3350, 0.2 M ammonium sulfate, 0.1 M magnesium chloride, 0.1 M sodium formate, and 0.1 M HEPES pH 8.0. Crystal was soaked in 30 mM N-allylglycine |