9C7X
Crystal structure of SARS-CoV-2 antibody 1H06 in complex with a HR2 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-10-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 59.983, 142.498, 54.262 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.890 - 1.960 |
R-factor | 0.1747 |
Rwork | 0.172 |
R-free | 0.21520 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.141 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 10.000 | 1.980 |
High resolution limit [Å] | 1.950 | 5.290 | 1.950 |
Rmerge | 0.110 | 0.030 | 0.991 |
Rmeas | 0.122 | 0.033 | 0.122 |
Rpim | 0.050 | 0.013 | 0.464 |
Total number of observations | 191647 | ||
Number of reflections | 33382 | 1898 | 1588 |
<I/σ(I)> | 6.9 | ||
Completeness [%] | 97.2 | 99.9 | 93.7 |
Redundancy | 5.7 | 6.3 | 5.6 |
CC(1/2) | 0.995 | 0.999 | 0.447 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 88 mM Tris (pH 7.0), 31% PEG monomethyl ether 2000 |