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9C6M

Yasminevirus c12orf29, a 5' to 3' RNA ligase, K73M mutant

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2020-12-02
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97891
Spacegroup nameP 1 21 1
Unit cell lengths103.401, 86.048, 114.311
Unit cell angles90.00, 105.19, 90.00
Refinement procedure
Resolution43.700 - 2.600
R-factor0.1964
Rwork0.195
R-free0.23520
Structure solution methodSAD
RMSD bond length0.003
RMSD bond angle0.601
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwarePHENIX (1.21.1_5286)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.560
High resolution limit [Å]2.5206.8302.520
Rmerge0.0780.0430.753
Rmeas0.0910.0500.908
Rpim0.0450.0250.499
Number of reflections8803732662186
<I/σ(I)>7
Completeness [%]94.297.468.4
Redundancy3.63.72.7
CC(1/2)0.9850.9870.573
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP62931.85 M sodium malonate, 0.1 M Bis-Tris, 25% ethylene glycol

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