9C6M
Yasminevirus c12orf29, a 5' to 3' RNA ligase, K73M mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97891 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 103.401, 86.048, 114.311 |
Unit cell angles | 90.00, 105.19, 90.00 |
Refinement procedure
Resolution | 43.700 - 2.600 |
R-factor | 0.1964 |
Rwork | 0.195 |
R-free | 0.23520 |
Structure solution method | SAD |
RMSD bond length | 0.003 |
RMSD bond angle | 0.601 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.21.1_5286) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.560 |
High resolution limit [Å] | 2.520 | 6.830 | 2.520 |
Rmerge | 0.078 | 0.043 | 0.753 |
Rmeas | 0.091 | 0.050 | 0.908 |
Rpim | 0.045 | 0.025 | 0.499 |
Number of reflections | 88037 | 3266 | 2186 |
<I/σ(I)> | 7 | ||
Completeness [%] | 94.2 | 97.4 | 68.4 |
Redundancy | 3.6 | 3.7 | 2.7 |
CC(1/2) | 0.985 | 0.987 | 0.573 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 1.85 M sodium malonate, 0.1 M Bis-Tris, 25% ethylene glycol |