9BR3
Crystal structure of p53 Y220C mutant in complex with PC-10709
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-11-09 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.960, 71.210, 104.850 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.991 - 1.900 |
R-factor | 0.1537 |
Rwork | 0.152 |
R-free | 0.19100 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.829 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.991 | 47.991 | 1.950 |
High resolution limit [Å] | 1.900 | 8.500 | 1.900 |
Rmerge | 0.098 | 0.034 | 0.390 |
Rmeas | 0.107 | 0.038 | 0.432 |
Total number of observations | 232344 | ||
Number of reflections | 38106 | 503 | 2297 |
<I/σ(I)> | 14.91 | 32.86 | 4.17 |
Completeness [%] | 97.6 | 98.4 | 81.1 |
Redundancy | 6.097 | 5.171 | 5.34 |
CC(1/2) | 0.998 | 0.998 | 0.933 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | p53, CID 3799, at 6.93mg/ml; Optimization screen PMV1-opt1 e3: 16% PEG 8000, 20% glycerol, 20mM K2HPO4; protein + 1mM BSI 107743; cryo: direct; crystal tracking ID 285723e3, puck tai0-7 |