9BDW
NF-kappaB RelA homo-dimer bound to GC-centric kappaB DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2013-11-04 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 119.263, 133.084, 45.670 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.820 - 1.870 |
R-factor | 0.15729 |
Rwork | 0.154 |
R-free | 0.22729 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ram |
RMSD bond length | 0.007 |
RMSD bond angle | 1.676 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 1.900 |
High resolution limit [Å] | 1.870 | 5.070 | 1.870 |
Rmerge | 0.987 | 0.047 | 3.696 |
Total number of observations | 409360 | ||
Number of reflections | 60489 | 3047 | 3019 |
<I/σ(I)> | 9.6 | ||
Completeness [%] | 99.5 | 92.3 | 99.8 |
Redundancy | 6.8 | 6 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | PEG3350, MES, Spermine, beta-octylglucoside |