9BDU
NF-kappaB RelA homo-dimer bound to AT-centric kappaB DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2013-11-19 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 115.516, 133.568, 45.443 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.910 - 2.030 |
R-factor | 0.22573 |
Rwork | 0.223 |
R-free | 0.27330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ram |
RMSD bond length | 0.006 |
RMSD bond angle | 1.204 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.060 |
High resolution limit [Å] | 2.030 | 5.500 | 2.030 |
Rmerge | 0.994 | 0.051 | 2.320 |
Number of reflections | 46270 | 2428 | 2286 |
<I/σ(I)> | 6.9 | ||
Completeness [%] | 99.7 | 95.4 | 99.1 |
Redundancy | 12.1 | 11.5 | 10.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | PEG3350, MES, beta-octylglucoside, spermine |