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9BDU

NF-kappaB RelA homo-dimer bound to AT-centric kappaB DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]80
Detector technologyCCD
Collection date2013-11-19
DetectorADSC QUANTUM 315
Wavelength(s)0.9793
Spacegroup nameP 21 21 2
Unit cell lengths115.516, 133.568, 45.443
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.910 - 2.030
R-factor0.22573
Rwork0.223
R-free0.27330
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2ram
RMSD bond length0.006
RMSD bond angle1.204
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0352)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]30.00030.0002.060
High resolution limit [Å]2.0305.5002.030
Rmerge0.9940.0512.320
Number of reflections4627024282286
<I/σ(I)>6.9
Completeness [%]99.795.499.1
Redundancy12.111.510.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293PEG3350, MES, beta-octylglucoside, spermine

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PDB entries from 2024-11-13

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