9BDI
Crystal structure of HIV-1 MPER scaffold in complex with antibody Fab Ab45.2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0337 |
Spacegroup name | P 1 |
Unit cell lengths | 37.617, 46.638, 178.352 |
Unit cell angles | 86.67, 86.76, 77.04 |
Refinement procedure
Resolution | 44.470 - 2.070 |
R-factor | 0.2375 |
Rwork | 0.235 |
R-free | 0.28260 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.611 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.21rc1_5127) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.110 |
High resolution limit [Å] | 2.070 | 2.070 |
Number of reflections | 63266 | 6109 |
<I/σ(I)> | 8.9 | |
Completeness [%] | 88.6 | |
Redundancy | 3 | |
CC(1/2) | 0.983 | 0.836 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.2M sodium chloride, 0.1M phosphate citrate and 20% PEG8000 |