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9BCC

Structure of KLHDC2 bound to SJ46418

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-1
Synchrotron siteNSLS-II
Beamline17-ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2024-01-30
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.92010
Spacegroup nameP 1 21 1
Unit cell lengths44.565, 88.292, 89.265
Unit cell angles90.00, 104.32, 90.00
Refinement procedure
Resolution39.320 - 1.700
R-factor0.206
Rwork0.204
R-free0.23970
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.823
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.21_5207)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.760
High resolution limit [Å]1.7003.6601.700
Rmerge0.0870.0540.377
Rmeas0.1020.0630.445
Rpim0.0520.0310.234
Total number of observations267252
Number of reflections7331574687260
<I/σ(I)>8.6
Completeness [%]99.799.799
Redundancy3.63.93.4
CC(1/2)0.9880.9930.815
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29513-18% PEG3350, 0.2M NaSCN, 0.1 M Bis-Tris Propane, pH = 7.5

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