9B0M
Crystal structure of Macrophage migration inhibitory factor from Plasmodium vivax
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2024-02-19 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.9786 |
Spacegroup name | P 63 |
Unit cell lengths | 75.457, 75.457, 36.947 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.730 - 1.800 |
R-factor | 0.1883 |
Rwork | 0.187 |
R-free | 0.21760 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 0.944 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((dev_5267: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.730 | 1.840 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.119 | 1.878 |
Rmeas | 0.124 | 1.948 |
Rpim | 0.034 | 0.514 |
Total number of observations | 154623 | 9558 |
Number of reflections | 11324 | 677 |
<I/σ(I)> | 11.2 | 1.7 |
Completeness [%] | 100.0 | |
Redundancy | 13.7 | 14.1 |
CC(1/2) | 0.994 | 0.664 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 291 | Index D5: 25% w/v Polyethylene glycol 3,350, 0.1 M Sodium acetate trihydrate pH 4.5, PlviB.00834.a.UX1.PW39232 at 12 mg/mL. plate 13719 D5 drop 3. Puck: PSL-0913, Cryo: 80% crystallant + 20% glycerol. |