Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9WJD

Crystal structure of rhesus macaque MHC class I molecule Mamu-B*05104 complexed with C14-Gly1-Gly2-Ile3-Ile4 lipopeptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL26B1
Synchrotron siteSPring-8
BeamlineBL26B1
Temperature [K]100
Detector technologyPIXEL
Collection date2022-07-14
DetectorDECTRIS EIGER X 4M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths48.931, 127.199, 77.139
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution32.980 - 1.700
R-factor0.2016
Rwork0.200
R-free0.22370
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle0.915
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX
Refinement softwarePHENIX (2.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.810
High resolution limit [Å]1.7001.700
Rmerge0.0390.375
Number of reflections522422094
<I/σ(I)>25.73.14
Completeness [%]97.5
Redundancy5.3
CC(1/2)1.0000.884
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293100mM MES buffer, pH6.5, 20% PEG smear high

256789

PDB entries from 2026-07-22

PDB statisticsPDBj update infoContact PDBjnumon