9UDY
Crystal structure of recombinant mushroom Agaricus bisporus mannose-binding protein with a longer C-terminal region
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2024-03-08 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.164, 43.982, 67.247 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.810 - 1.510 |
R-factor | 0.13511 |
Rwork | 0.132 |
R-free | 0.19376 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5eha |
RMSD bond length | 0.007 |
RMSD bond angle | 1.365 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.980 | 1.540 |
High resolution limit [Å] | 1.510 | 1.510 |
Rmerge | 0.048 | 0.649 |
Rmeas | 0.052 | 0.743 |
Rpim | 0.021 | 0.356 |
Total number of observations | 119287 | 3940 |
Number of reflections | 19365 | 946 |
<I/σ(I)> | 21.3 | 2 |
Completeness [%] | 100.0 | |
Redundancy | 6.2 | 4.2 |
CC(1/2) | 1.000 | 0.778 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | sodium formate |