Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9TDV

Structure of D81A-Fructofuranosidase from Purpureocilum lilacinum in complex with raffinose

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2025-04-03
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979257
Spacegroup nameP 21 21 21
Unit cell lengths79.145, 141.075, 252.710
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.654 - 2.000
Rwork0.175
R-free0.19530
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle1.427
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0425)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.6542.020
High resolution limit [Å]2.0002.000
Rmerge0.171
Rpim0.0690.531
Number of reflections1912609389
<I/σ(I)>16.32.3
Completeness [%]100.0100
Redundancy13.5
CC(1/2)0.9990.704
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.52910.1M Bis-Tris, pH 5.5 and 2M ammonium sulfate using 2:1 ratio (protein:reservoir). Cryoprotected with 20% glycerol and flash-cooled in liquid nitrogen.

250835

PDB entries from 2026-03-18

PDB statisticsPDBj update infoContact PDBjnumon